krocus

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krocus performs multi-locus sequence typing from uncorrected long reads.

Home https://github.com/andrewjpage/krocus
Versions 1.0.1, 1.0.0, 0.2.3, 0.2.2
License GPL-3.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/krocus

Krocus can predict a sequence type directly from uncorrected long reads, and was designed to consume read data as it is produced, providing results in minutes.

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install krocus

and update with:

conda update krocus

docker

A Docker container is available at https://quay.io/repository/biocontainers/krocus.