recipe krocus

krocus performs multi-locus sequence typing from uncorrected long reads.

Homepage

https://github.com/andrewjpage/krocus

License

GPL / GPL-3.0

Recipe

/krocus/meta.yaml

Krocus can predict a sequence type directly from uncorrected long reads, and was designed to consume read data as it is produced, providing results in minutes.

package krocus

(downloads) docker_krocus

Versions

1.0.1-0, 1.0.0-0, 0.2.3-0, 0.2.2-1, 0.2.2-0

Depends biopython

>=1.68

Depends pyfastaq

>=3.14.0

Depends python

>=3

Depends setuptools

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install krocus

and update with:

conda update krocus

or use the docker container:

docker pull quay.io/biocontainers/krocus:<tag>

(see krocus/tags for valid values for <tag>)