recipe linkage2allegro

Converts between the output linkage formats of Merlin, Simwalk, Genehunter, and Swiftlink into Allegro.

Homepage:

https://github.com/BioTools-Tek/linkage-converter

License:

GPL3

Recipe:

/linkage2allegro/meta.yaml

package linkage2allegro

(downloads) docker_linkage2allegro

versions:

2017.3-1,  2017.3-0,  2017.2-0,  2017.1-0

depends python:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install linkage2allegro

and update with::

   mamba update linkage2allegro

To create a new environment, run:

mamba create --name myenvname linkage2allegro

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/linkage2allegro:<tag>

(see `linkage2allegro/tags`_ for valid values for ``<tag>``)

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Link to this page

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