recipe luciphor2

Luciphor2 performs PTM-site localization on MS/MS data

Homepage:

http://luciphor2.sourceforge.net/

License:

Apache-2.0

Recipe:

/luciphor2/meta.yaml

package luciphor2

(downloads) docker_luciphor2

versions:

2020_04_03-1,  2020_04_03-0,  2018_06_28-1,  2018_06_28-0

depends openjdk:

>=6

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install luciphor2

and update with::

   mamba update luciphor2

To create a new environment, run:

mamba create --name myenvname luciphor2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/luciphor2:<tag>

(see `luciphor2/tags`_ for valid values for ``<tag>``)

Notes

Adds a wrapper shell script "luciphor2". This shell wrapper is called "luciphor2" and is on $PATH by default. By default "-Xms512m -Xmx1g" is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run with "luciphor -Xms512m -Xmx1g"

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/luciphor2/README.html)