recipe lumpy-sv

a general probabilistic framework for structural variant discovery

Homepage

https://github.com/arq5x/lumpy-sv

License

MIT

Recipe

/lumpy-sv/meta.yaml

package lumpy-sv

(downloads) docker_lumpy-sv

Versions

0.3.0-2, 0.3.0-1, 0.3.0-0, 0.2.14a-2, 0.2.14a-1, 0.2.14a-0, 0.2.13-1, 0.2.13-0, 0.2.12-3, 0.2.12-2, 0.2.12-1, 0.2.12-0, 0.2.11-0

Depends gawk

Depends htslib

>=1.9,<1.10.0a0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends numpy

Depends pysam

Depends python

2.7.*

Depends sambamba

Depends samblaster

Depends samtools

Depends util-linux

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install lumpy-sv

and update with:

conda update lumpy-sv

or use the docker container:

docker pull quay.io/biocontainers/lumpy-sv:<tag>

(see lumpy-sv/tags for valid values for <tag>)