recipe mageck

MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout), an algorithm to process, QC, analyze and visualize CRISPR screening data.



BSD License



package mageck

(downloads) docker_mageck


depends ipython:

depends libgcc-ng:


depends libstdcxx-ng:


depends numpy:

depends python:


depends python_abi:

3.10.* *_cp310

depends scipy:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mageck

and update with::

   mamba update mageck

To create a new environment, run:

mamba create --name myenvname mageck

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `mageck/tags`_ for valid values for ``<tag>``)

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