recipe makehub

MakeHub is a command line tool for the fully automatic generation of of track data hubs for visualizing genomes with the UCSC genome browser.

Homepage:

https://github.com/Gaius-Augustus/MakeHub

License:

GPL / GPL-3.0

Recipe:

/makehub/meta.yaml

package makehub

Versions:

1.0.5-1,  1.0.5-0,  1.0.4-0,  1.0.3-0

Depends:

• augustus >=3.3.1

• biopython

• python >=3

• samtools

• ucsc-bedtobigbed

• ucsc-fatotwobit

• ucsc-genepredcheck

• ucsc-genepredtobed

• ucsc-genepredtobiggenepred

• ucsc-gtftogenepred

• ucsc-hggcpercent

• ucsc-ixixx

• ucsc-twobitinfo

• ucsc-wigtobigwig

Required By:

• braker2

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install makehub

and update with:

conda update makehub

or use the docker container:

docker pull quay.io/biocontainers/makehub:<tag>

(see makehub/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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