recipe mapsplice

MapSplice is a software for mapping RNA-seq data to reference genome for splice junction discovery that depends only on reference genome, and not on any further annotations.

Homepage:

http://www.netlab.uky.edu/p/bioinfo/MapSplice2

License:

Custom

Recipe:

/mapsplice/meta.yaml

Links:

biotools: mapsplice

package mapsplice

(downloads) docker_mapsplice

versions:

2.2.1-0,  2.2.0-1,  2.2.0-0

depends libgcc-ng:

>=7.3.0

depends libstdcxx-ng:

>=7.3.0

depends ncurses:

>=6.1,<6.2.0a0

depends python:

>=2.7,<2.8.0a0

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mapsplice

and update with::

   mamba update mapsplice

To create a new environment, run:

mamba create --name myenvname mapsplice

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mapsplice:<tag>

(see `mapsplice/tags`_ for valid values for ``<tag>``)

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Link to this page

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