recipe marvd2

Metagenomic Archaeal Virus Detector 2

Homepage:

https://bitbucket.org/MAVERICLab/marvd2

Documentation:

https://bitbucket.org/MAVERICLab/marvd2/src/master/README.md

License:

GPL / GPL-3.0-only

Recipe:

/marvd2/meta.yaml

package marvd2

versions:

0.11.9-0,  0.11.8-0,  0.11.3-0,  0.11.2-0

depends biopython:

1.80

depends ete3:

>=3.1.2

depends hmmer:

>=3.3.2

depends joblib:

>=1.2.0

depends matplotlib-base:

>=3.4.3

depends mmseqs2:

>=13.45111

depends numpy:

>=1.23.5,<2.0a0

depends pandas:

>=1.5.2

depends prodigal:

2.6.3

depends psutil:

>=5.9.4

depends python:

>=3.9,<3.10.0a0

depends scikit-learn:

>=1.1.2

depends scipy:

>=1.10.0

depends swifter:

>=1.3.4

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install marvd2

and update with::

   mamba update marvd2

To create a new environment, run:

mamba create --name myenvname marvd2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/marvd2:<tag>

(see `marvd2/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/marvd2/README.html)