- recipe marvd2
Metagenomic Archaeal Virus Detector 2
- Homepage:
- Documentation:
https://bitbucket.org/MAVERICLab/marvd2/src/master/README.md
- License:
GPL / GPL-3.0-only
- Recipe:
- package marvd2¶
- versions:
0.11.9-0,0.11.8-0,0.11.3-0,0.11.2-0- depends biopython:
1.80- depends ete3:
>=3.1.2- depends hmmer:
>=3.3.2- depends joblib:
>=1.2.0- depends matplotlib-base:
>=3.4.3- depends mmseqs2:
>=13.45111- depends numpy:
>=1.23.5,<2.0a0- depends pandas:
>=1.5.2- depends prodigal:
2.6.3- depends psutil:
>=5.9.4- depends python:
>=3.9,<3.10.0a0- depends scikit-learn:
>=1.1.2- depends scipy:
>=1.10.0- depends swifter:
>=1.3.4- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install marvd2 and update with:: mamba update marvd2
To create a new environment, run:
mamba create --name myenvname marvd2
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/marvd2:<tag> (see `marvd2/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/marvd2/README.html)
