recipe mash

Fast sequence distance estimator that uses MinHash

Homepage:https://github.com/marbl/Mash
License:https://raw.githubusercontent.com/marbl/Mash/master/LICENSE.txt
Recipe:/mash/meta.yaml
package mash

(downloads) docker_mash

Versions:

2.1-1, 2.1-0, 2.0-3, 2.0-2, 2.0-1, 2.0-0, 1.1-0, 1.0.2-2, 1.0.2-1

Depends:
  • capnproto
  • gsl >=2.4,<2.5.0a0
  • libgcc-ng >=7.3.0
  • libstdcxx-ng >=7.3.0
  • openblas >=0.3.3,<0.3.4.0a0
  • zlib >=1.2.11,<1.3.0a0
Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mash

and update with:

conda update mash

or use the docker container:

docker pull quay.io/biocontainers/mash:<tag>

(see mash/tags for valid values for <tag>)