recipe mash

Fast sequence distance estimator that uses MinHash

Homepage:

https://github.com/marbl/Mash

License:

https://github.com/marbl/Mash/blob/master/LICENSE.txt

Recipe:

/mash/meta.yaml

package mash

Versions:

2.3-6,  2.3-5,  2.3-4,  2.3-3,  2.3-2,  2.3-1,  2.3-0,  2.2.2-2,  2.2.2-1, 

2.3-6,  2.3-5,  2.3-4,  2.3-3,  2.3-2,  2.3-1,  2.3-0,  2.2.2-2,  2.2.2-1,  2.2.2-0,  2.2.1-1,  2.2.1-0,  2.2-0,  2.1.1-0,  2.1-1,  2.1-0,  2.0-3,  2.0-2,  2.0-1,  2.0-0,  1.1-0,  1.0.2-2,  1.0.2-1

Depends:

• capnproto >=0.10.2,<0.10.3.0a0

• gsl >=2.7,<2.8.0a0

• libcblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• zlib

Required By:

• pharokka

• plassembler

• proksee

• trycycler

• referenceseeker

• pantools

• genometreetk

• pmga

• skmer

• ectyper

• kleborate

• mob_suite

• zga

• sistr_cmd

• phylophlan

• panacota

• bactopia-sketcher

• magpurify

• jolytree

• scagaire

• wgfast

• flanker

• drep

• panaroo

• ntm-profiler

• parsnp

• vrhyme

• pyseer

• squeegee

• homopolish

• bactopia

• mashtree

• bactopia-gather

• pgcgap

• aquamis

• gtdbtk

• nullarbor

• plasmidid

• confindr

• taranis

• meta-sparse

• maast

• refseq_masher

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mash

and update with:

conda update mash

or use the docker container:

docker pull quay.io/biocontainers/mash:<tag>

(see mash/tags for valid values for <tag>)

Download stats

Link to this page

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