recipe mashmap

A fast approximate aligner for long DNA sequences

Homepage:https://github.com/marbl/MashMap
License:Custom
Recipe:/mashmap/meta.yaml
package mashmap

(downloads) docker_mashmap

Versions:

2.0-2, 2.0-1, 2.0-0, 1.0-1, 1.0-0

Depends:
  • gsl >=2.2.1,<2.3.0a0
  • openblas >=0.2.20,<0.2.21.0a0
  • zlib >=1.2.11,<1.3.0a0
Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mashmap

and update with:

conda update mashmap

or use the docker container:

docker pull quay.io/biocontainers/mashmap:<tag>

(see mashmap/tags for valid values for <tag>)