recipe mashtree

Create a tree using Mash distances

Homepage:

https://github.com/lskatz/mashtree

License:

GPL-3.0

Recipe:

/mashtree/meta.yaml

package mashtree

versions:

1.4.6-1,  1.4.6-0,  1.4.5-0,  1.4.3-0,  1.2.0-2,  1.2.0-1,  1.2.0-0,  1.1.2-0,  1.1-0, 

1.4.6-1,  1.4.6-0,  1.4.5-0,  1.4.3-0,  1.2.0-2,  1.2.0-1,  1.2.0-0,  1.1.2-0,  1.1-0,  1.0.4-0,  1.0.1-0,  1.0-0,  0.57-1,  0.57-0,  0.55-0,  0.37-0,  0.36-0,  0.35.4-0,  0.30-2,  0.30-0,  0.28-0,  0.26-0,  0.25-0,  0.21-0,  0.20-0,  0.12-0

depends libgcc:

>=13

depends mash:

>=1.1

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends perl-bioperl:

>=1.7.2

depends perl-dbd-sqlite:

>=1.58

depends perl-dbd-sqlite:

>=1.76,<2.0a0

depends perl-file-which:

depends perl-module-build:

0.4234.*

depends quicktree:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mashtree

and update with::

   mamba update mashtree

To create a new environment, run:

mamba create --name myenvname mashtree

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mashtree:<tag>

(see `mashtree/tags`_ for valid values for ``<tag>``)

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