recipe massiveqc

Tools for QC massive RNA-seq samples

Homepage:

https://github.com/shimw6828/MassiveQC

License:

MIT / MIT

Recipe:

/massiveqc/meta.yaml

package massiveqc

versions:

0.1.2-0,  0.1.1-0,  0.1.0-0,  0.0.7-0,  0.0.5-0

depends atropos:

depends bamtools:

depends fastparquet:

depends fastq-screen:

depends hisat2:

depends more-itertools:

depends numpy:

depends pandas:

>=1.3.2

depends python:

depends samtools:

depends scikit-learn:

depends shap:

depends subread:

depends tqdm:

depends xopen:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install massiveqc

and update with::

   mamba update massiveqc

To create a new environment, run:

mamba create --name myenvname massiveqc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/massiveqc:<tag>

(see `massiveqc/tags`_ for valid values for ``<tag>``)

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Link to this page

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