-
recipe
medaka¶ Neural network sequence error correction.
- Homepage
- Documentation
- License
OTHER / Mozilla Public License 2.0
- Recipe
-
package
medaka¶ 
- Versions
0.7.1-1, 0.7.0-1, 0.7.0-0, 0.6.5-0, 0.6.4-0, 0.6.2-0, 0.6.0-0, 0.5.2-0
- Depends bcftools
1.9
- Depends biopython
- Depends bzip2
>=1.0.6,<2.0a0
- Depends cffi
- Depends h5py
2.7.1
- Depends htslib
>=1.9,<1.10.0a0
- Depends intervaltree
>=3.0.0
- Depends keras
2.2.4
- Depends libdeflate
>=1.0,<1.1.0a0
- Depends libgcc-ng
>=7.3.0
- Depends minimap2
2.11
- Depends numpy
1.16.1
- Depends pysam
- Depends python
>=3.6,<3.7.0a0
- Depends pyyaml
5.1
- Depends samtools
1.9
- Depends tensorflow
>=1.12.2
- Depends whatshap
0.18
- Depends xz
>=5.2.4,<5.3.0a0
- Depends zlib
>=1.2.11,<1.3.0a0
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install medaka
and update with:
conda update medaka
or use the docker container:
docker pull quay.io/biocontainers/medaka:<tag>
(see medaka/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/medaka/README.html)