recipe megahit

MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

Homepage

https://github.com/voutcn/megahit

License

GPL / GPL-3.0

Recipe

/megahit/meta.yaml

Links

biotools: megahit, doi: 10.1093/bioinformatics/btv033

package megahit

Versions

1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.6-0,  1.1.3-0,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.0.6-1, 

1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.6-0,  1.1.3-0,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.0.6-1,  1.0.3-1,  1.0.3-0

Depends

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• python

• zlib >=1.2.11,<1.3.0a0

Required By

• macrel

• shovill

• anvio

• metawrap

• shovill-se

• mosca

• nullarbor

• datma

• mtsv

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install megahit

and update with:

conda update megahit

or use the docker container:

docker pull quay.io/biocontainers/megahit:<tag>

(see megahit/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/megahit/README.html)