recipe megahit

MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

Homepage:

https://github.com/voutcn/megahit

License:

GPL / GPL-3.0

Recipe:

/megahit/meta.yaml

Links:

biotools: megahit, doi: 10.1093/bioinformatics/btv033

package megahit

Versions:

1.2.9-2,  1.2.9-1,  1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.6-0,  1.1.3-0,  1.1.2-1,  1.1.2-0, 

1.2.9-2,  1.2.9-1,  1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.6-0,  1.1.3-0,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.0.6-1,  1.0.3-1,  1.0.3-0

Depends:

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• python

• zlib >=1.2.13,<1.3.0a0

Required By:

• megapath

• mosca

• etoki

• shovill

• anvio

• macrel

• mtsv

• metawrap-mg

• metaplatanus

• mitofinder

• shovill-se

• ngless

• titanomics

• captus

• metagem

• mitoz

• nullarbor

• datma

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install megahit

and update with:

conda update megahit

or use the docker container:

docker pull quay.io/biocontainers/megahit:<tag>

(see megahit/tags for valid values for <tag>)

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