recipe megahit

MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

Homepage

https://github.com/voutcn/megahit

License

GPL / GPL-3.0

Recipe

/megahit/meta.yaml

Links

biotools: megahit, doi: 10.1093/bioinformatics/btv033

package megahit

Versions

1.2.9-1,  1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.6-0,  1.1.3-0,  1.1.2-1,  1.1.2-0,  1.1.1-0, 

1.2.9-1,  1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.6-0,  1.1.3-0,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.0.6-1,  1.0.3-1,  1.0.3-0

Depends

• libgcc-ng >=9.3.0

• libstdcxx-ng >=9.3.0

• python

• zlib >=1.2.11,<1.3.0a0

Required By

• macrel

• mosca

• anvio

• datma

• mtsv

• metawrap

• shovill-se

• nullarbor

• mitofinder

• megapath

• shovill

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install megahit

and update with:

conda update megahit

or use the docker container:

docker pull quay.io/biocontainers/megahit:<tag>

(see megahit/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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