Package Recipe 'meme'

recipe meme

Motif-based sequence analysis tools.

Homepage:: https://meme-suite.org
Documentation:: https://meme-suite.org/meme/doc/overview.html
License:: Custom
Recipe:: /meme/meta.yaml
Links:: biotools: meme_suite, usegalaxy-eu: meme_dreme, doi: 10.1093/nar/gkv416

package meme¶

Versions:

5.5.9-0, 5.5.8-0, 5.5.7-3, 5.5.7-2, 5.5.7-1, 5.5.7-0, 5.5.6-0, 5.5.5-1, 5.5.5-0,

5.5.9-0, 5.5.8-0, 5.5.7-3, 5.5.7-2, 5.5.7-1, 5.5.7-0, 5.5.6-0, 5.5.5-1, 5.5.5-0, 5.5.4-0, 5.5.3-0, 5.5.2-1, 5.5.2-0, 5.4.1-2, 5.4.1-1, 5.4.1-0, 5.3.0-2, 5.3.0-0, 5.1.1-3, 5.1.1-2, 5.1.1-1, 5.1.1-0, 5.1.0-0, 5.0.5-0, 5.0.2-5, 5.0.2-3, 5.0.2-2, 4.12.0-2, 4.12.0-1, 4.12.0-0, 4.11.2-9, 4.11.2-8, 4.11.2-6, 4.11.2-5, 4.11.2-4, 4.11.2-3, 4.11.2-2, 4.11.2-1, 4.11.2-0, 4.11.1-7, 4.11.1-6, 4.11.1-5, 4.11.1-4, 4.11.1-3, 4.11.1-2, 4.11.1-1, 4.11.1-0, 4.8.1-3, 4.8.1-2, 4.8.1-1

Depends:

on _openmp_mutex >=4.5
on icu >=73.2,<74.0a0
on libexpat >=2.7.3,<3.0a0
on libgcc >=13
on libgomp
on libxml2 >=2.12.7,<3.0a0
on libxslt >=1.1.39,<2.0a0
on libzlib >=1.3.1,<2.0a0
on nodejs >=22.6.0,<23.0a0
on perl >=5.32.1,<5.33.0a0 *_perl5
on perl-app-cpanminus
on perl-cgi
on perl-file-which
on perl-html-parser
on perl-html-template
on perl-html-tree
on perl-json
on perl-log-log4perl
on perl-math-cdf
on perl-module-build
on perl-sys-info
on perl-xml-parser
on perl-xml-simple
on perl-yaml
on python >=3.7

Additional platforms:

linux-aarch64, osx-arm64

Installation¶

You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).

Pixi¶

With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:

pixi global install meme

to add into an existing workspace instead, run:

pixi add meme

In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:

pixi workspace channel add conda-forge
pixi workspace channel add bioconda

Conda¶

With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:

conda install meme

Alternatively, to install into a new environment, run:

conda create -n envname meme

with envname being the name of the desired environment.

Container¶

Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:

docker pull quay.io/biocontainers/meme:<tag>

(see meme/tags for valid values for <tag>).

Integrated deployment¶

Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/meme/README.html)