recipe meme

Motif-based sequence analysis tools.

Homepage:

https://meme-suite.org

Documentation:

https://meme-suite.org/meme/doc/overview.html

License:

Custom

Recipe:

/meme/meta.yaml

Links:

biotools: meme_suite, usegalaxy-eu: meme_dreme, doi: 10.1093/nar/gkv416

package meme

versions:

5.5.7-0,  5.5.6-0,  5.5.5-1,  5.5.5-0,  5.5.4-0,  5.5.3-0,  5.5.2-1,  5.5.2-0,  5.4.1-2, 

5.5.7-0,  5.5.6-0,  5.5.5-1,  5.5.5-0,  5.5.4-0,  5.5.3-0,  5.5.2-1,  5.5.2-0,  5.4.1-2,  5.4.1-1,  5.4.1-0,  5.3.0-2,  5.3.0-0,  5.1.1-3,  5.1.1-2,  5.1.1-1,  5.1.1-0,  5.1.0-0,  5.0.5-0,  5.0.2-5,  5.0.2-3,  5.0.2-2,  4.12.0-2,  4.12.0-1,  4.12.0-0,  4.11.2-8,  4.11.2-6,  4.11.2-5,  4.11.2-4,  4.11.2-3,  4.11.2-2,  4.11.2-1,  4.11.2-0,  4.11.1-7,  4.11.1-6,  4.11.1-5,  4.11.1-4,  4.11.1-3,  4.11.1-2,  4.11.1-1,  4.11.1-0,  4.8.1-3,  4.8.1-2,  4.8.1-1

depends _openmp_mutex:

>=4.5

depends icu:

>=73.2,<74.0a0

depends libexpat:

>=2.6.2,<3.0a0

depends libgcc:

depends libgcc-ng:

>=12

depends libxml2:

>=2.12.7,<3.0a0

depends libxslt:

>=1.1.39,<2.0a0

depends libzlib:

>=1.2.13,<2.0a0

depends nodejs:

>=20.12.2,<21.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends perl-app-cpanminus:

depends perl-cgi:

depends perl-file-which:

depends perl-html-parser:

depends perl-html-template:

depends perl-html-tree:

depends perl-json:

depends perl-log-log4perl:

depends perl-math-cdf:

depends perl-module-build:

depends perl-sys-info:

depends perl-xml-parser:

depends perl-xml-simple:

depends perl-yaml:

depends python:

>=3.7

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install meme

and update with::

   mamba update meme

To create a new environment, run:

mamba create --name myenvname meme

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/meme:<tag>

(see `meme/tags`_ for valid values for ``<tag>``)

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