recipe meta-sparse

SPARSE indexes reference genomes in public databases into hierarchical clusters and uses it to predict origins of metagenomic reads.

Homepage

https://github.com/zheminzhou/SPARSE/

License

GPL3 / GNU General Public License v3 (GPLv3)

Recipe

/meta-sparse/meta.yaml

package meta-sparse

(downloads) docker_meta-sparse

Versions

0.1.12-1, 0.1.12-0, 0.1.11-0, 0.1.2-2, 0.1.2-1, 0.1.2-0

Depends bowtie2

Depends cython

Depends mash

Depends msgpack-python

Depends numpy

Depends pandas

Depends pycapnp

Depends python

>=2.7,<2.8.0a0

Depends samtools

Depends scipy

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install meta-sparse

and update with:

conda update meta-sparse

or use the docker container:

docker pull quay.io/biocontainers/meta-sparse:<tag>

(see meta-sparse/tags for valid values for <tag>)