- recipe metaclock
A python package for facilitating strain-level phylogenetic and molecular clock analysis
- Homepage:
- License:
A-GPL 3.0
- Recipe:
- package metaclock¶
- versions:
1.0.0-0
- depends biopython:
- depends blast:
>=2.6.0
- depends bowtie2:
- depends bzip2:
- depends cmseq:
- depends dendropy:
- depends ete3:
- depends mapdamage2:
- depends matplotlib-base:
- depends numpy:
- depends perl-bioperl:
- depends prokka:
- depends pysam:
- depends python:
>=3.6
- depends raxml:
- depends samtools:
- depends scikit-learn:
- depends seaborn:
- depends trimal:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install metaclock and update with:: mamba update metaclock
To create a new environment, run:
mamba create --name myenvname metaclock
with
myenvname
being a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/metaclock:<tag> (see `metaclock/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metaclock/README.html)