recipe metacluster

MetaCluster5.1 is a new software for binning short pair-end reads

Homepage:

http://i.cs.hku.hk/~alse/MetaCluster/

License:

GPLv2

Recipe:

/metacluster/meta.yaml

Links:

doi: 10.1093/bioinformatics/bts397

MetaCluster5.1 is an unsupervised binning method that can (1) samples with low-abundance species, or (2) samples (even with high-abundance) with many extremely-low-abundance species. The input file should be in fasta format. Every odd-number read and its next read are supposed to be pair-end reads.

package metacluster

(downloads) docker_metacluster

versions:

5.1-7,  5.1-6,  5.1-5,  5.1-4,  5.1-3,  5.1-2,  5.1-1,  5.1-0

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metacluster

and update with::

   mamba update metacluster

To create a new environment, run:

mamba create --name myenvname metacluster

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metacluster:<tag>

(see `metacluster/tags`_ for valid values for ``<tag>``)

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