recipe metagraph

Ultra Scalable Framework for DNA Search, Alignment, Assembly

Homepage:

https://github.com/ratschlab/metagraph

Documentation:

https://metagraph.ethz.ch

License:

MIT / MIT

Recipe:

/metagraph/meta.yaml

The MetaGraph framework allows for indexing and analysis of very large biological sequence collections, producing compressed indexes that can represent several petabases of input data. The indexes can be efficiently queried with any query sequence of interest.

package metagraph

(downloads) docker_metagraph

versions:
0.3.6-4,  0.3.6-3,  0.3.6-2,  0.3.6-1,  0.3.6-0,  0.3.5-0,  0.3.4-1,  0.3.4-0,  0.3.3-1, 

0.3.6-4,  0.3.6-3,  0.3.6-2,  0.3.6-1,  0.3.6-0,  0.3.5-0,  0.3.4-1,  0.3.4-0,  0.3.3-1,  0.3.3-0,  0.3.2-0,  0.2.0-0,  0.1.0-2,  0.1.0-1,  0.1.0-0

depends _openmp_mutex:

>=4.5

depends bzip2:

>=1.0.8,<2.0a0

depends htslib:

>=1.20,<1.22.0a0

depends jemalloc:

depends libgcc-ng:

>=12

depends libgomp:

depends libjemalloc:

>=5.3.0

depends libstdcxx-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metagraph

and update with::

   mamba update metagraph

To create a new environment, run:

mamba create --name myenvname metagraph

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metagraph:<tag>

(see `metagraph/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metagraph/README.html)