recipe metapop

A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations

Homepage:

https://https://github.com/metaGmetapop/metapop

License:

GPL / GPL-2.0

Recipe:

/metapop/meta.yaml

package metapop

versions:

1.0.2-1,  1.0.2-0

depends bcftools:

depends bioconductor-biostrings:

depends bioconductor-rsamtools:

depends r-base:

>=4.0,<4.1

depends r-bit64:

depends r-compositions:

depends r-cowplot:

depends r-data.table:

depends r-doparallel:

depends r-gggenes:

depends r-ggplot2:

depends r-pheatmap:

depends r-rcolorbrewer:

depends r-stringr:

depends r-vegan:

depends samtools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metapop

and update with::

   mamba update metapop

To create a new environment, run:

mamba create --name myenvname metapop

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metapop:<tag>

(see `metapop/tags`_ for valid values for ``<tag>``)

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