recipe metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data.

Homepage:

http://github.com/daler/metaseq

License:

MIT / MIT

Recipe:

/metaseq/meta.yaml

package metaseq

versions:

0.5.6-5,  0.5.6-4,  0.5.6-3,  0.5.6-2,  0.5.6-0

depends biopython:

depends bx-python:

>=0.7.1

depends fisher:

depends gffutils:

>=0.8.2

depends libgcc-ng:

>=10.3.0

depends matplotlib:

>=1.3.1

depends numpy:

>=1.8.0

depends pandas:

>=0.13.1

depends pybedtools:

>=0.6.6

depends pysam:

>=0.7

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

depends pyyaml:

>=3.10

depends scikit-learn:

depends scipy:

>=0.10.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metaseq

and update with::

   mamba update metaseq

To create a new environment, run:

mamba create --name myenvname metaseq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metaseq:<tag>

(see `metaseq/tags`_ for valid values for ``<tag>``)

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