recipe metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data.

Homepage

http://github.com/daler/metaseq

License

MIT / MIT

Recipe

/metaseq/meta.yaml

package metaseq

(downloads) docker_metaseq

Versions

0.5.6-2, 0.5.6-0

Depends biopython

Depends bx-python

>=0.7.1

Depends cython

Depends fisher

Depends gffutils

>=0.8.2

Depends matplotlib

>=1.3.1

Depends numpy

>=1.8.0

Depends pandas

>=0.13.1

Depends pybedtools

>=0.6.6

Depends pysam

>=0.7

Depends python

>=2.7,<2.8.0a0

Depends pyyaml

>=3.10

Depends scikit-learn

Depends scipy

>=0.10.1

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install metaseq

and update with:

conda update metaseq

or use the docker container:

docker pull quay.io/biocontainers/metaseq:<tag>

(see metaseq/tags for valid values for <tag>)