recipe metawatt

MetaWatt is a metagenomic binning tool

Homepage:

https://sourceforge.net/projects/metawatt/

License:

AFL

Recipe:

/metawatt/meta.yaml

Links:

doi: 10.3389/fmicb.2012.00410

The Metawatt binner is a graphical binning tool that makes use of multivariate statistics of tetranucleotide frequencies and differential coverage based binning. It also performs taxonomic assessment of binning quality (via diamond BLASTx). Created bins can be edited and exported as fasta. The Metawatt is implemented in Java SWING and minimally depends on Diamond, HMMer3.1, BBMap, Prodigal and the Batik library for the export of SVG graphics.

package metawatt

Versions:

3.5.3-3,  3.5.3-2,  3.5.3-1,  3.5.3-0

Depends:

• aragorn

• bbmap

• blast

• diamond 0.7.*

• fasttree

• hmmer

• mafft

• openjdk

• prodigal

• samtools

• wget

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install metawatt

and update with:

conda update metawatt

or use the docker container:

docker pull quay.io/biocontainers/metawatt:<tag>

(see metawatt/tags for valid values for <tag>)

Notes

metawatt --help

Download stats

Link to this page

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