recipe metaxa

Improved Identification and Taxonomic Classification of Small and Large Subunit rRNA in Metagenomic Data.

Homepage:

http://microbiology.se/software/metaxa2/

License:

GPL / GPL-3.0

Recipe:

/metaxa/meta.yaml

Links:

biotools: metaxa, doi: 10.1111/1755-0998.12399, doi: 10.1093/bioinformatics/bty482

package metaxa

(downloads) docker_metaxa

versions:

2.2.3-2,  2.2.3-1,  2.2.3-0,  2.2-3,  2.2-2,  2.2-1,  2.2-0

depends blast-legacy:

2.2.*

depends hmmer:

3.1.*

depends mafft:

7.*

depends perl:

>=5.32.1,<6.0a0 *_perl5

depends vsearch:

>=2.7.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metaxa

and update with::

   mamba update metaxa

To create a new environment, run:

mamba create --name myenvname metaxa

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metaxa:<tag>

(see `metaxa/tags`_ for valid values for ``<tag>``)

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