recipe meteor

Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems.

Homepage:

https://github.com/metagenopolis/meteor

License:

GPL3 / GPL-3.0-or-later

Recipe:

/meteor/meta.yaml

Meteor relies on genes catalogue to perform specie level taxonomic assignments, functional and strain diffusion analysis.

package meteor

versions:

2.0.9-0

depends bcftools:

>=0.1.19

depends bedtools:

>=2.18.0

depends biom-format:

depends bowtie2:

>=2.3.5

depends cogent3:

depends ete3:

depends packaging:

depends pandas:

depends pyarrow:

depends pysam:

depends python:

>=3.10

depends raxml-ng:

>=1.0.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install meteor

and update with::

   mamba update meteor

To create a new environment, run:

mamba create --name myenvname meteor

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/meteor:<tag>

(see `meteor/tags`_ for valid values for ``<tag>``)

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Link to this page

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