recipe mikado

A Python3 annotation program to select the best gene model in each locus



LGPL / GNU Lesser General Public License v3 or later (LGPLv3+)



package mikado

(downloads) docker_mikado


1.2.4-0, 1.2.3-1, 1.2.2-1, 1.2.2-0, 1.2.1-0, 1.1.1-0, 1.0.2-0

Depends biopython


Depends cython


Depends docutils


Depends drmaa

Depends frozendict

Depends intervaltree

Depends jsonschema

Depends libmagic

Depends networkx


Depends nose

Depends numpy

Depends portcullis

Depends pyfaidx

Depends python


Depends python-magic

Depends pyyaml

Depends scikit-learn


Depends scipy


Depends simplejson

Depends snakemake

Depends sqlalchemy


Depends sqlalchemy-utils

Depends tabulate

Depends typing

Depends ujson

Depends wheel




With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mikado

and update with:

conda update mikado

or use the docker container:

docker pull<tag>

(see mikado/tags for valid values for <tag>)