recipe mikado

A Python3 annotation program to select the best gene model in each locus

Homepage

https://github.com/lucventurini/mikado

License

LGPL / GNU Lesser General Public License v3 or later (LGPLv3+)

Recipe

/mikado/meta.yaml

package mikado

(downloads) docker_mikado

Versions

1.2.4-0, 1.2.3-1, 1.2.2-1, 1.2.2-0, 1.2.1-0, 1.1.1-0, 1.0.2-0

Depends biopython

>=1.66

Depends cython

>=0.28.2

Depends docutils

!=0.13.1

Depends drmaa

Depends frozendict

Depends intervaltree

Depends jsonschema

Depends libmagic

Depends networkx

>=1.10

Depends nose

Depends numpy

Depends portcullis

Depends pyfaidx

Depends python

>=3.5,<3.6.0a0

Depends python-magic

Depends pyyaml

Depends scikit-learn

>=0.17.0

Depends scipy

>=0.15.0

Depends simplejson

Depends snakemake

Depends sqlalchemy

>=1

Depends sqlalchemy-utils

Depends tabulate

Depends typing

Depends ujson

Depends wheel

>=0.28.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mikado

and update with:

conda update mikado

or use the docker container:

docker pull quay.io/biocontainers/mikado:<tag>

(see mikado/tags for valid values for <tag>)