recipe mirdeep-p2

A fast and accurate tool for analyzing the miRNA transcriptome in plants



GNU General Public v3 (GPLv3)



package mirdeep-p2

(downloads) docker_mirdeep-p2



depends bowtie:

depends bowtie2:

depends perl:

depends randfold:

depends viennarna:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mirdeep-p2

and update with::

   mamba update mirdeep-p2

To create a new environment, run:

mamba create --name myenvname mirdeep-p2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `mirdeep-p2/tags`_ for valid values for ``<tag>``)

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