recipe mirfix

MIRfix automatically curates miRNA datasets by improving alignments of their precursors, the consistency of the annotation of mature miR and miR* sequence, and the phylogenetic coverage. MIRfix produces alignments that are comparable across families and sets the stage for improved homology search as well as quantitative analyses.

Homepage

https://github.com/Bierinformatik/MIRfix

License

GPL / GPL-3.0

Recipe

/mirfix/meta.yaml

package mirfix

(downloads) docker_mirfix

Versions

1.0.1-0

Depends biopython

Depends clustalw

Depends dialign2

Depends matplotlib

Depends numpy

Depends python

<3

Depends tk

>=8.6.9,<8.7.0a0

Depends viennarna

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mirfix

and update with:

conda update mirfix

or use the docker container:

docker pull quay.io/biocontainers/mirfix:<tag>

(see mirfix/tags for valid values for <tag>)