recipe mirfix

MIRfix automatically curates miRNA datasets by improving alignments of their precursors, the consistency of the annotation of mature miR and miR* sequence, and the phylogenetic coverage. MIRfix produces alignments that are comparable across families and sets the stage for improved homology search as well as quantitative analyses.

Homepage:

https://github.com/Bierinformatik/MIRfix

License:

GPL / GPL-3.0

Recipe:

/mirfix/meta.yaml

package mirfix

Versions:

2.1.1-0,  2.1.0-1,  2.1.0-0,  2.0.1-0,  2.0.0-1,  2.0.0-0,  1.0.1-0

Depends:

• biopython >=1.78

• blast >=2.13.0

• clustalw >=2.1

• dialign2 >=2.2.1

• matplotlib-base >=3.3.1

• natsort >=6.2.0

• numpy >=1.19.1

• pyfaidx >=0.7.1

• python >=3

• tk >=8.6.10

• viennarna >=2.4.15

Required By:

• mirnature

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mirfix

and update with:

conda update mirfix

or use the docker container:

docker pull quay.io/biocontainers/mirfix:<tag>

(see mirfix/tags for valid values for <tag>)

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Link to this page

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