recipe misopy

Mixture of Isoforms model (MISO) for isoform quantitation using RNA-Seq

Homepage

http://genes.mit.edu/burgelab/miso/

License

GPL2 / GPL2

Recipe

/misopy/meta.yaml

package misopy

(downloads) docker_misopy

Versions

0.5.4-1, 0.5.4-0

Depends bedtools

Depends libgcc-ng

>=4.9

Depends matplotlib

Depends numpy

>=1.5.0

Depends pysam

>=0.6.0

Depends python

>=2.7,<2.8.0a0

Depends samtools

<=1.2

Depends scipy

>=0.9.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install misopy

and update with:

conda update misopy

or use the docker container:

docker pull quay.io/biocontainers/misopy:<tag>

(see misopy/tags for valid values for <tag>)