recipe moabs

Methylation analysis on Bisulfite-Sequencing reads.

Homepage:

https://github.com/sunnyisgalaxy/moabs

Documentation:

https://github.com/sunnyisgalaxy/moabs/blob/v1.3.9.6/README.md

License:

MIT / MIT

Recipe:

/moabs/meta.yaml

Links:

doi: 10.1021/acs.jproteome.8b00708, usegalaxy-eu: moabs

package moabs

(downloads) docker_moabs

versions:
1.3.9.6-8,  1.3.9.6-6,  1.3.9.6-5,  1.3.9.6-4,  1.3.9.6-3,  1.3.9.6-2,  1.3.9.6-1,  1.3.9.6-0,  1.3.9.5-0, 

1.3.9.6-8,  1.3.9.6-6,  1.3.9.6-5,  1.3.9.6-4,  1.3.9.6-3,  1.3.9.6-2,  1.3.9.6-1,  1.3.9.6-0,  1.3.9.5-0,  1.3.9.4-0,  1.3.9.3-0,  1.3.9.2-0,  1.3.9.0-0,  1.3.8.9-0,  1.3.8.8-0,  1.3.8.7-0,  1.3.8.6-1,  1.3.8.6-0,  1.3.8.5-0,  1.3.8.4-2,  1.3.8.4-1,  1.3.8.4-0,  1.3.8.2-0,  1.3.8.1-1,  1.3.8.1-0,  1.3.7.9-1,  1.3.7.9-0,  1.3.7.8-0,  1.3.7.7-0,  1.3.7.6-0,  1.3.7.5-0,  1.3.4.6-0,  1.3.4.5-1,  1.3.4.5-0,  1.3.4-0

depends boost-cpp:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends ncurses:

>=6.5,<7.0a0

depends perl:

depends perl-config-simple:

depends r-base:

depends r-ggplot2:

depends r-gridextra:

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install moabs

and update with::

   mamba update moabs

To create a new environment, run:

mamba create --name myenvname moabs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/moabs:<tag>

(see `moabs/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/moabs/README.html)