recipe mqc

qualtiy control tool to assess the mapping quality of a ribosome profiling experiment

Homepage

https://github.com/Biobix/mQC

License

GNU General Public License v3.0

Recipe

/mqc/meta.yaml

package mqc

(downloads) docker_mqc

Versions

1.10-1, 1.10-0, 1.9-0, 1.8-0, 1.7-0, 1.6-0, 1.5-0, 1.4-0, 1.3-0, 1.2-3, 1.2-2, 1.2-1, 1.2-0

Depends matplotlib

Depends numpy

Depends pandas

Depends perl

5.22.0*

Depends perl-app-cpanminus

Depends perl-dbd-sqlite

Depends perl-dbi

Depends perl-parallel-forkmanager

Depends plastid

0.4.7 py27_0

Depends pysam

0.11*

Depends python

2.7*

Depends r-base

3.4.1*

Depends samtools

Depends seaborn

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mqc

and update with:

conda update mqc

or use the docker container:

docker pull quay.io/biocontainers/mqc:<tag>

(see mqc/tags for valid values for <tag>)