- recipe msproteomicstools
msproteomicstools is a Python library that can be used in LC-MS/MS based proteomics. It features a core library called.
- Homepage:
- License:
BSD / BSD
- Recipe:
- package msproteomicstools¶
- versions:
0.11.0-4,0.11.0-3,0.11.0-2,0.11.0-1,0.11.0-0,0.8.0-1,0.8.0-0,0.5.0-1,0.5.0-0- depends biopython:
- depends configobj:
- depends libgcc-ng:
>=10.3.0- depends libstdcxx-ng:
>=10.3.0- depends lxml:
- depends numpy:
>=1.16.5,<2.0a0- depends pymzml:
0.7.8- depends pyteomics:
>=2.4.0- depends python:
>=2.7,<2.8.0a0- depends python-cluster:
1.3.3- depends python_abi:
2.7.* *_cp27mu- depends scikits-datasmooth:
- depends scipy:
- depends statsmodels:
- depends xlsxwriter:
>=0.5.3- depends xlwt:
- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install msproteomicstools and update with:: mamba update msproteomicstools
To create a new environment, run:
mamba create --name myenvname msproteomicstools
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/msproteomicstools:<tag> (see `msproteomicstools/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/msproteomicstools/README.html)
