recipe mtbseq

Pipeline for WGS analysis of M. tuberculosis

Homepage

https://github.com/ngs-fzb/MTBseq_source

License

GPLv3

Recipe

/mtbseq/meta.yaml

MTBseq is a semi-automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from Illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates

package mtbseq

(downloads) docker_mtbseq

Versions

1.0.4-0, 1.0.3-1, 1.0.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mtbseq

and update with:

conda update mtbseq

or use the docker container:

docker pull quay.io/biocontainers/mtbseq:<tag>

(see mtbseq/tags for valid values for <tag>)