recipe mtglink

MTG-link is a local assembly tool for linked-read data

Homepage:

https://github.com/anne-gcd/MTG-Link

License:

file

Recipe:

/mtglink/meta.yaml

package mtglink

versions:

2.4.1-0,  2.4.0-0,  2.3.2-0,  2.3.1-0,  2.3.0-0,  2.2.1-0,  2.2.0-0,  2.1.0-0,  2.0.0-0, 

2.4.1-0,  2.4.0-0,  2.3.2-0,  2.3.1-0,  2.3.0-0,  2.2.1-0,  2.2.0-0,  2.1.0-0,  2.0.0-0,  1.2.0-0,  1.1.0-2,  1.1.0-0,  1.0.2-1,  1.0.2-0,  1.0.1-0,  1.0.0-0

depends biopython:

depends gfapy:

depends lrez:

>=2.2.3

depends mindthegap:

>=2.2.3

depends mummer:

depends pathos:

depends pysam:

depends python:

>=3

depends regex:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mtglink

and update with::

   mamba update mtglink

To create a new environment, run:

mamba create --name myenvname mtglink

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mtglink:<tag>

(see `mtglink/tags`_ for valid values for ``<tag>``)

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