recipe multiqc

Create aggregate bioinformatics analysis reports across many samples and tools

Homepage:

http://multiqc.info

Documentation:

http://multiqc.info/docs/

Developer docs:

https://github.com/ewels/MultiQC

License:

GPL3 / GNU General Public License v3 (GPLv3)

Recipe:

/multiqc/meta.yaml

Links:

biotools: multiqc, doi: https://doi.org/10.1093/bioinformatics/btw354

package multiqc

(downloads) docker_multiqc

versions:
1.19-01.18-01.17-11.17-01.16-01.15-01.14-01.13-01.13a-1

1.19-01.18-01.17-11.17-01.16-01.15-01.14-01.13-01.13a-11.13a-01.12-01.11-01.10.1-11.10.1-01.10-11.10-01.9-11.9-01.8-21.8-11.8-01.7-41.7-31.7-21.7-11.7-01.6-01.6a0-21.6a0-11.6a0-01.5-01.5a-01.4-01.3-21.3-11.3-01.2-01.1-01.0-41.0-11.0-00.9.1a0-40.9.1a0-30.9.1a0-20.9.1a0-10.9.1a0-00.9-00.9a-00.8-00.8dev0-00.7.1dev0-10.7.1dev0-00.7-00.6-00.5-00.4-0

depends click:

depends coloredlogs:

depends future:

>0.14.0

depends humanize:

depends importlib-metadata:

depends jinja2:

>=3.0.0

depends lzstring:

depends markdown:

depends matplotlib-base:

>=2.1.1

depends networkx:

>=2.5.1

depends numpy:

depends packaging:

depends pyaml-env:

depends python:

>=3.8

depends pyyaml:

>=4

depends requests:

depends rich:

>=10

depends rich-click:

depends setuptools:

depends simplejson:

depends spectra:

>=0.0.10

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install multiqc

and update with::

   mamba update multiqc

To create a new environment, run:

mamba create --name myenvname multiqc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/multiqc:<tag>

(see `multiqc/tags`_ for valid values for ``<tag>``)

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