recipe muscle

Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences

Homepage:

https://github.com/rcedgar/muscle

License:

GPL-3.0-only

Recipe:

/muscle/meta.yaml

Links:

biotools: muscle

package muscle

(downloads) docker_muscle

versions:
5.3-1,  5.3-0,  5.2-0,  5.1-3,  5.1-2,  5.1-1,  5.1.0-1,  5.1.0-0,  5.1-0, 

5.3-1,  5.3-0,  5.2-0,  5.1-3,  5.1-2,  5.1-1,  5.1.0-1,  5.1.0-0,  5.1-0,  3.8.1551-8,  3.8.1551-7,  3.8.1551-6,  3.8.1551-5,  3.8.1551-4,  3.8.1551-3,  3.8.1551-2,  3.8.1551-1,  3.8.31-0

depends libcxx:

>=18

depends llvm-openmp:

>=18.1.8

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install muscle

and update with::

   mamba update muscle

To create a new environment, run:

mamba create --name myenvname muscle

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/muscle:<tag>

(see `muscle/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/muscle/README.html)