recipe music-deconvolution

Multi-subject single cell deconvolution

Homepage:

https://github.com/xuranw/MuSiC

License:

GPL (>= 3)

Recipe:

/music-deconvolution/meta.yaml

Companion package to "A bulk tissue deconvolution method with multi-subject single cell expression reference." This package providase functions to estimate bulk tissue cell type proportions with multi-subject single cell expression as reference.

package music-deconvolution

versions:

0.1.1-0

depends bioconductor-biobase:

depends r-base:

>=3.5.1,<3.5.2.0a0

depends r-ggplot2:

depends r-mcmcpack:

depends r-nnls:

depends r-plyr:

depends xbioc:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install music-deconvolution

and update with::

   mamba update music-deconvolution

To create a new environment, run:

mamba create --name myenvname music-deconvolution

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/music-deconvolution:<tag>

(see `music-deconvolution/tags`_ for valid values for ``<tag>``)

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