- recipe music-deconvolution
Multi-subject single cell deconvolution
GPL (>= 3)
Companion package to "A bulk tissue deconvolution method with multi-subject single cell expression reference." This package providase functions to estimate bulk tissue cell type proportions with multi-subject single cell expression as reference.
- package music-deconvolution¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install music-deconvolution and update with:: mamba update music-deconvolution
To create a new environment, run:
mamba create --name myenvname music-deconvolution
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/music-deconvolution:<tag> (see `music-deconvolution/tags`_ for valid values for ``<tag>``)