recipe mvicuna

M-Vicuna is a modularized version of VICUNA, a de novo assembly program targeting populations with high mutation rates

Homepage:

https://www.broadinstitute.org/scientific-community/science/projects/viral-genomics/vicuna

License:

https://www.broadinstitute.org/node/4238

Recipe:

/mvicuna/meta.yaml

package mvicuna

versions:

1.0-11,  1.0-10,  1.0-9,  1.0-8,  1.0-7,  1.0-6,  1.0-5,  1.0-4,  1.0-1

depends _openmp_mutex:

>=4.5

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mvicuna

and update with::

   mamba update mvicuna

To create a new environment, run:

mamba create --name myenvname mvicuna

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mvicuna:<tag>

(see `mvicuna/tags`_ for valid values for ``<tag>``)

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Link to this page

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