recipe nanocomp

Comparing runs of Oxford Nanopore sequencing data and alignments

Homepage:

https://github.com/wdecoster/NanoComp

License:

MIT / MIT

Recipe:

/nanocomp/meta.yaml

package nanocomp

(downloads) docker_nanocomp

versions:
1.23.1-0,  1.22.0-0,  1.21.2-0,  1.21.0-0,  1.20.0-0,  1.19.3-0,  1.19.1-0,  1.19.0-0,  1.18.0-0, 

1.23.1-0,  1.22.0-0,  1.21.2-0,  1.21.0-0,  1.20.0-0,  1.19.3-0,  1.19.1-0,  1.19.0-0,  1.18.0-0,  1.17.0-0,  1.16.1-0,  1.16.0-0,  1.15.1-0,  1.15.0-0,  1.14.1-0,  1.13.1-0,  1.13.0-0,  1.12.0-0,  1.11.3-0,  1.11.2-0,  1.10.1-0,  1.10.0-0,  1.9.2-1,  1.9.2-0,  1.9.1-0,  1.9.0-0,  1.8.0-0,  1.7.0-0,  1.6.0-0,  1.1.0-1,  1.1.0-0,  1.0.0-0,  0.23.1-0,  0.23.0-1,  0.19.0-1,  0.19.0-0,  0.16.0-0,  0.15.0-0,  0.12.4-0,  0.7.0-0,  0.5.0-0

depends nanoget:

>=1.19.0

depends nanomath:

>=1.0.0

depends nanoplot:

>=1.39.0

depends numpy:

>=1.16.5

depends pandas:

depends plotly:

>=3.4.2

depends psutil:

depends pyarrow:

depends python:

>=3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install nanocomp

and update with::

   mamba update nanocomp

To create a new environment, run:

mamba create --name myenvname nanocomp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/nanocomp:<tag>

(see `nanocomp/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nanocomp/README.html)