recipe nanosim

NanoSim is a fast and scalable read simulator that captures the technology-specific features of ONT data, and allows for adjustments upon improvement of nanopore sequencing technology.

Homepage

https://github.com/bcgsc/NanoSim

License

GPL

Recipe

/nanosim/meta.yaml

package nanosim

(downloads) docker_nanosim

Versions

2.2.0-0, 2.1.0-0, 2.0.0-1, 2.0.0-0, v1.3.0-0, v1.2.0-0, v1.0.1-1

Depends htseq

>=0.9.1

Depends last

Depends minimap2

Depends numpy

>=1.13.3

Depends pybedtools

>=0.7.10

Depends pysam

>=0.13

Depends python

Depends scikit-learn

>=0.20.0

Depends scipy

>=1.0.0

Depends six

>=1.10.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install nanosim

and update with:

conda update nanosim

or use the docker container:

docker pull quay.io/biocontainers/nanosim:<tag>

(see nanosim/tags for valid values for <tag>)