recipe nextgenmap

NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime.

Homepage:

https://github.com/Cibiv/NextGenMap

License:

MIT / MIT

Recipe:

/nextgenmap/meta.yaml

package nextgenmap

Versions:

0.5.5-4,  0.5.5-3,  0.5.5-2,  0.5.5-0,  0.5.3-2,  0.5.3-1,  0.5.3-0,  0.4.13-1,  0.4.13-0

Depends:

• binutils

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

Required By:

• slamdunk

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install nextgenmap

and update with:

conda update nextgenmap

or use the docker container:

docker pull quay.io/biocontainers/nextgenmap:<tag>

(see nextgenmap/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nextgenmap/README.html)