recipe nextgenmap

NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime.

Homepage:

https://github.com/Cibiv/NextGenMap

License:

MIT / MIT

Recipe:

/nextgenmap/meta.yaml

package nextgenmap

(downloads) docker_nextgenmap

versions:

0.5.5-4,  0.5.5-3,  0.5.5-2,  0.5.5-0,  0.5.3-2,  0.5.3-1,  0.5.3-0,  0.4.13-1,  0.4.13-0

depends binutils:

depends libgcc-ng:

>=7.5.0

depends libstdcxx-ng:

>=7.5.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install nextgenmap

and update with::

   mamba update nextgenmap

To create a new environment, run:

mamba create --name myenvname nextgenmap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/nextgenmap:<tag>

(see `nextgenmap/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/nextgenmap/README.html)