- recipe nextstrain-cli
The Nextstrain command-line interface (CLI)
- Homepage:
- Developer docs:
- License:
MIT / MIT
- Recipe:
The Nextstrain command-line interface (CLI)—a program called nextstrain—aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
- package nextstrain-cli¶
-
- Versions:
6.2.0-1
,6.2.0-0
,6.1.0.post1-0
,6.0.3-0
,6.0.2-0
,6.0.0-0
,5.0.1-0
,5.0.0-0
,4.2.0-1
,6.2.0-1
,6.2.0-0
,6.1.0.post1-0
,6.0.3-0
,6.0.2-0
,6.0.0-0
,5.0.1-0
,5.0.0-0
,4.2.0-1
,4.2.0-0
,4.1.1-1
,4.1.1-0
,4.1.0-0
,4.0.0-0
,3.2.5-0
,3.2.4-0
,3.2.3-0
,3.2.2-0
,3.2.1-0
,3.2.0-0
,3.1.1-0
,3.0.6-0
,3.0.5-0
,3.0.3-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install nextstrain-cli
and update with:
conda update nextstrain-cli
or use the docker container:
docker pull quay.io/biocontainers/nextstrain-cli:<tag>
(see nextstrain-cli/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/nextstrain-cli/README.html)