recipe nextstrain-cli

The Nextstrain command-line interface (CLI)

Homepage:

https://docs.nextstrain.org/projects/cli/

Developer docs:

https://github.com/nextstrain/cli

License:

MIT / MIT

Recipe:

/nextstrain-cli/meta.yaml

The Nextstrain command-line interface (CLI)—a program called nextstrain—aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

package nextstrain-cli

Versions:

6.2.0-1,  6.2.0-0,  6.1.0.post1-0,  6.0.3-0,  6.0.2-0,  6.0.0-0,  5.0.1-0,  5.0.0-0,  4.2.0-1, 

6.2.0-1,  6.2.0-0,  6.1.0.post1-0,  6.0.3-0,  6.0.2-0,  6.0.0-0,  5.0.1-0,  5.0.0-0,  4.2.0-1,  4.2.0-0,  4.1.1-1,  4.1.1-0,  4.1.0-0,  4.0.0-0,  3.2.5-0,  3.2.4-0,  3.2.3-0,  3.2.2-0,  3.2.1-0,  3.2.0-0,  3.1.1-0,  3.0.6-0,  3.0.5-0,  3.0.3-0

Depends:

• boto3

• docutils

• fasteners

• fsspec

• importlib_resources >=5.3.0

• packaging

• pyjwt >=2.0.0

• pyparsing

• python >=3.6

• requests

• s3fs >=2021.04.0

• typing_extensions >=3.6.4

• wcmatch >=6.0

• wrapt

Required By:

• nextstrain

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install nextstrain-cli

and update with:

conda update nextstrain-cli

or use the docker container:

docker pull quay.io/biocontainers/nextstrain-cli:<tag>

(see nextstrain-cli/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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