recipe nextstrain-cli

The Nextstrain command-line interface (CLI)

Homepage:

https://docs.nextstrain.org/projects/cli/

Developer docs:

https://github.com/nextstrain/cli

License:

MIT / MIT

Recipe:

/nextstrain-cli/meta.yaml

The Nextstrain command-line interface (CLI)—a program called nextstrain—aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

package nextstrain-cli

(downloads) docker_nextstrain-cli

Versions:
6.2.0-16.2.0-06.1.0.post1-06.0.3-06.0.2-06.0.0-05.0.1-05.0.0-04.2.0-1

6.2.0-16.2.0-06.1.0.post1-06.0.3-06.0.2-06.0.0-05.0.1-05.0.0-04.2.0-14.2.0-04.1.1-14.1.1-04.1.0-04.0.0-03.2.5-03.2.4-03.2.3-03.2.2-03.2.1-03.2.0-03.1.1-03.0.6-03.0.5-03.0.3-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install nextstrain-cli

and update with:

conda update nextstrain-cli

or use the docker container:

docker pull quay.io/biocontainers/nextstrain-cli:<tag>

(see nextstrain-cli/tags for valid values for <tag>)

Download stats