recipe ngseqbasic

Basic ChIP/DNaseI/ATAC analysis - from FASTQ to visualisation of tracks, in one command.

Homepage

http://userweb.molbiol.ox.ac.uk/public/telenius/NGseqBasicManual/external/instructionsBioconda.html

License

GPL-3.0

Recipe

/ngseqbasic/meta.yaml

package ngseqbasic

(downloads) docker_ngseqbasic

Versions

2.0.1-1, 2.0.1-0

Depends bedtools

==2.17.0

Depends bowtie

==1.0.0

Depends bowtie2

==2.3.0

Depends flash

==1.2.11

Depends perl

5.22.0.1

Depends samtools

==0.1.19

Depends trim-galore

==0.4.1

Depends ucsc-bedclip

==332

Depends ucsc-bedgraphpack

==332

Depends ucsc-bedgraphtobigwig

==332

Depends ucsc-bedtobigbed

==332

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ngseqbasic

and update with:

conda update ngseqbasic

or use the docker container:

docker pull quay.io/biocontainers/ngseqbasic:<tag>

(see ngseqbasic/tags for valid values for <tag>)