recipe novoalign

Powerful tool designed for mapping of short reads onto a reference genome from Illumina, Ion Torrent, and 454 NGS platforms

Homepage:

http://www.novocraft.com/products/novoalign/

License:

Commercial (requires license for use)

Recipe:

/novoalign/meta.yaml

Links:

biotools: Novoalign

package novoalign

(downloads) docker_novoalign

versions:
4.03.04-3,  4.03.04-2,  4.03.04-1,  4.03.04-0,  4.02.02-4,  4.02.02-2,  4.02.02-1,  4.02.02-0,  4.02.00-0, 

4.03.04-3,  4.03.04-2,  4.03.04-1,  4.03.04-0,  4.02.02-4,  4.02.02-2,  4.02.02-1,  4.02.02-0,  4.02.00-0,  3.09.04-6,  3.09.04-5,  3.09.04-4,  3.09.04-3,  3.09.04-2,  3.09.04-1,  3.09.04-0,  3.09.00-2,  3.09.00-1,  3.09.00-0,  3.07.00-1,  3.07.00-0,  3.06.05-0,  3.04.04-3,  3.04.04-2,  3.04.04-0,  3.03.02-0

depends curl:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends util-linux:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install novoalign

and update with::

   mamba update novoalign

To create a new environment, run:

mamba create --name myenvname novoalign

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/novoalign:<tag>

(see `novoalign/tags`_ for valid values for ``<tag>``)

Notes

Novoalign V4 will not run unless a "novoalign.lic" license file is provided in the same directory as its binaries. The license file can be copied in to the conda environment via the "novoalign-license-register" command.

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