recipe nucleoatac

Python package for calling nucleosomes using ATAC-Seq data. Also includes general scripts for working with paired-end ATAC-Seq data (or potentially other paired-end data).

Homepage

https://github.com/GreenleafLab/NucleoATAC

Documentation

http://nucleoatac.readthedocs.io/en/latest/

License

MIT / MIT

Recipe

/nucleoatac/meta.yaml

Links

doi: 10.1101/gr.192294.115

package nucleoatac

(downloads) docker_nucleoatac

Versions

0.3.4-2, 0.3.4-1, 0.3.4-0, 0.3.1-0

Depends cython

>=0.22

Depends matplotlib

Depends numpy

>=1.9.1

Depends pysam

>=0.8.1

Depends python

<3

Depends scipy

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install nucleoatac

and update with:

conda update nucleoatac

or use the docker container:

docker pull quay.io/biocontainers/nucleoatac:<tag>

(see nucleoatac/tags for valid values for <tag>)