recipe octopus

Octopus is a mapping-based variant caller that implements several calling models within a unified haplotype-aware framework.

Homepage

https://github.com/luntergroup/octopus

License

MIT / MIT

Recipe

/octopus/meta.yaml

package octopus

(downloads) docker_octopus

Versions
0.6.3b-30.6.3b-20.6.3b-10.6.3b-00.5.2b-20.5.2b-10.5.2b-00.5.1b-00.5.0b-0

0.6.3b-30.6.3b-20.6.3b-10.6.3b-00.5.2b-20.5.2b-10.5.2b-00.5.1b-00.5.0b-00.4.1a-10.4.1a-00.3.3a-10.3.3a-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install octopus

and update with:

conda update octopus

or use the docker container:

docker pull quay.io/biocontainers/octopus:<tag>

(see octopus/tags for valid values for <tag>)