recipe ont-fast5-api

Oxford Nanopore Technologies fast5 API software

Homepage:

https://github.com/nanoporetech/ont_fast5_api

License:

MOZILLA / MPL-2.0

Recipe:

/ont-fast5-api/meta.yaml

package ont-fast5-api

versions:

4.1.3-0,  4.1.2-0,  4.1.1-0,  4.1.0-0,  4.0.2-0,  4.0.0-0,  3.3.0-0,  3.2.0-0,  3.1.6-0, 

4.1.3-0,  4.1.2-0,  4.1.1-0,  4.1.0-0,  4.0.2-0,  4.0.0-0,  3.3.0-0,  3.2.0-0,  3.1.6-0,  3.1.5-0,  3.1.4-0,  3.1.3-2,  3.1.3-1,  3.1.3-0,  3.0.1-0,  3.0.0-0,  2.0.1-0,  2.0.0-0,  1.4.8-1,  1.4.8-0,  1.4.7-0,  1.4.4-0,  1.4.3-0,  1.4.0-0,  1.3.0-0,  1.2.0-0,  1.1.0-0,  1.0.1-1,  1.0.1-0,  0.4.1-1,  0.4.1-0

depends h5py:

>=2.6

depends hdf5:

depends numpy:

>=1.11

depends packaging:

depends progressbar33:

>=2.3.1

depends python:

>=3

depends six:

>=1.9

depends tar:

depends zstd:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ont-fast5-api

and update with::

   mamba update ont-fast5-api

To create a new environment, run:

mamba create --name myenvname ont-fast5-api

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ont-fast5-api:<tag>

(see `ont-fast5-api/tags`_ for valid values for ``<tag>``)

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