recipe optitype

Precision HLA typing from next-generation sequencing data

Homepage

https://github.com/FRED-2/OptiType

License

BSD

Recipe

/optitype/meta.yaml

package optitype

(downloads) docker_optitype

Versions

1.3.2-3, 1.3.2-2, 1.3.2-1, 1.3.1-0, 1.2.1-1, 1.2.1-0, 1.2-0

Depends future

Depends glpk

Depends hdf5

Depends matplotlib

Depends numpy

1.15.4.*

Depends pandas

Depends pyomo

Depends pysam

Depends pytables

Depends python

>=2.7,<2.8.0a0

Depends razers3

Depends samtools

Depends six

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install optitype

and update with:

conda update optitype

or use the docker container:

docker pull quay.io/biocontainers/optitype:<tag>

(see optitype/tags for valid values for <tag>)