recipe pairix

2D indexing on bgzipped text files of paired genomic coordinates

Homepage:

https://github.com/4dn-dcic/pairix

License:

MIT / MIT

Recipe:

/pairix/meta.yaml

package pairix

Versions:

0.3.7-4,  0.3.7-3,  0.3.7-2,  0.3.7-1,  0.3.7-0,  0.3.6-4,  0.3.6-2,  0.3.6-1,  0.3.6-0, 

0.3.7-4,  0.3.7-3,  0.3.7-2,  0.3.7-1,  0.3.7-0,  0.3.6-4,  0.3.6-2,  0.3.6-1,  0.3.6-0,  0.3.5-0,  0.3.3-0,  0.3.2-0,  0.3.1-0,  0.3.0-0,  0.2.5-0,  0.2.4-0,  0.1.6-0

Depends:

• htslib

• libgcc-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

Required By:

• cooler

• hint

• coolbox

• bioframe

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pairix

and update with:

conda update pairix

or use the docker container:

docker pull quay.io/biocontainers/pairix:<tag>

(see pairix/tags for valid values for <tag>)

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Link to this page

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