recipe pairix

2D indexing on bgzipped text files of paired genomic coordinates

Homepage

https://github.com/4dn-dcic/pairix

License

MIT / MIT

Recipe

/pairix/meta.yaml

package pairix

Versions

0.3.7-2,  0.3.7-1,  0.3.7-0,  0.3.6-4,  0.3.6-2,  0.3.6-1,  0.3.6-0,  0.3.5-0,  0.3.3-0, 

0.3.7-2,  0.3.7-1,  0.3.7-0,  0.3.6-4,  0.3.6-2,  0.3.6-1,  0.3.6-0,  0.3.5-0,  0.3.3-0,  0.3.2-0,  0.3.1-0,  0.3.0-0,  0.2.5-0,  0.2.4-0,  0.1.6-0

Depends

• htslib

• libgcc-ng >=7.5.0

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• zlib >=1.2.11,<1.3.0a0

Required By

• hint

• bioframe

• coolbox

• cooler

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pairix

and update with:

conda update pairix

or use the docker container:

docker pull quay.io/biocontainers/pairix:<tag>

(see pairix/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pairix/README.html)