recipe paladin

Protein Alignment and Detection Interface

Homepage:

http://genomebio.org/paladin/

Developer docs:

https://github.com/twestbrookunh/paladin

License:

MIT

Recipe:

/paladin/meta.yaml

PALADIN is a protein sequence alignment tool designed for the accurate functional characterization of metagenomes.

package paladin

(downloads) docker_paladin

versions:
1.4.6-5,  1.4.6-4,  1.4.6-3,  1.4.6-2,  1.4.6-1,  1.4.6-0,  1.4.4-0,  1.3.1-2,  1.3.1-1, 

1.4.6-5,  1.4.6-4,  1.4.6-3,  1.4.6-2,  1.4.6-1,  1.4.6-0,  1.4.4-0,  1.3.1-2,  1.3.1-1,  1.3.1-0

depends curl:

depends libgcc-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install paladin

and update with::

   mamba update paladin

To create a new environment, run:

mamba create --name myenvname paladin

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/paladin:<tag>

(see `paladin/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/paladin/README.html)