recipe paragraph

Graph realignment tools for structural variants

Homepage:

https://github.com/Illumina/paragraph

License:

Apache License 2.0

Recipe:

/paragraph/meta.yaml

package paragraph

versions:

2.3-1,  2.3-0,  2.2b-0,  2.2a-0

depends bzip2:

>=1.0.8,<2.0a0

depends htslib:

>=1.10.2,<1.22.0a0

depends intervaltree:

depends jsonschema:

depends libgcc-ng:

>=7.5.0

depends libstdcxx-ng:

>=7.5.0

depends pysam:

depends python:

>=3

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install paragraph

and update with::

   mamba update paragraph

To create a new environment, run:

mamba create --name myenvname paragraph

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/paragraph:<tag>

(see `paragraph/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/paragraph/README.html)